gMCSpy package

Module contents

• gMCSpy.ProblemDefinitions module
  • buildDictionaryDossageNetwork()
  • buildDictionaryFBA()
  • buildDictionaryFBAWithDeletions()
  • buildDictionaryMCSGeneProblem()
  • buildDictionaryMCSGeneTargetedProblem()
  • buildDictionaryMCSProblem()
  • buildDictionaryMCSTargetedProblem()
  • buildDictionaryReactionsFBAWithDeletions()
  • buildDictionaryRegNetwork()
  • readjustmentProblem()
• gMCSpy.ProblemInterpreters module
  • cplexProblemInterpreter()
  • gurobiProblemInterpreter()
  • scipProblemInterpreter()
• gMCSpy.Utilities module
  • add_quotes_inside_brackets()
  • createLog()
  • createToyModel()
  • loadSolutions()
  • read_sol_log()
  • saveSolutionDict()
  • saveSolutions()
  • setSolver()
• gMCSpy.Validations module
  • checkFromReaction()
  • checkGMCS()
  • checkGMCSChild()
  • checkGMCSParallel()
• gMCSpy.calculateGMCS module
  • buildGMatrix()
  • buildReactionFromBranch()
  • buildRxnGeneMat()
  • calculateGeneMCS()
  • calculateMCSForGPRs()
  • calculate_GPR_MCS()
  • createSparseMatrix()
  • getGPRDict()
  • initiateLogger()
  • mergeIsforms()
  • parseGPRToModel()
  • relatedRows()
  • simplifyGMatrix()
  • transformReactionIdsIntoIndexes()
• gMCSpy.calculateMCS module
  • calculateMCS()