gMCSpy

• gMCSpy package
  • Module contents
    • gMCSpy.ProblemDefinitions module
      • buildDictionaryDossageNetwork()
      • buildDictionaryFBA()
      • buildDictionaryFBAWithDeletions()
      • buildDictionaryMCSGeneProblem()
      • buildDictionaryMCSGeneTargetedProblem()
      • buildDictionaryMCSProblem()
      • buildDictionaryMCSTargetedProblem()
      • buildDictionaryReactionsFBAWithDeletions()
      • buildDictionaryRegNetwork()
      • readjustmentProblem()
    • gMCSpy.ProblemInterpreters module
      • cplexProblemInterpreter()
      • gurobiProblemInterpreter()
      • scipProblemInterpreter()
    • gMCSpy.Utilities module
      • add_quotes_inside_brackets()
      • createLog()
      • createToyModel()
      • loadSolutions()
      • read_sol_log()
      • saveSolutionDict()
      • saveSolutions()
      • setSolver()
    • gMCSpy.Validations module
      • checkFromReaction()
      • checkGMCS()
      • checkGMCSChild()
      • checkGMCSParallel()
    • gMCSpy.calculateGMCS module
      • buildGMatrix()
      • buildReactionFromBranch()
      • buildRxnGeneMat()
      • calculateGeneMCS()
      • calculateMCSForGPRs()
      • calculate_GPR_MCS()
      • createSparseMatrix()
      • getGPRDict()
      • initiateLogger()
      • mergeIsforms()
      • parseGPRToModel()
      • relatedRows()
      • simplifyGMatrix()
      • transformReactionIdsIntoIndexes()
    • gMCSpy.calculateMCS module
      • calculateMCS()